There is a bug in version 2.0.4.beta that could replace accurately integrated calculated yields with less accurate point-calculated values under certain conditions. Edit: This bug does not affect experimental yield data in memory or simulated data.
Version 2.0.5.beta prevents this problem.
"Integrated yields" calculations using "Run gosia input" will update the calculated yields accurately in version 2.0.4.
The bug-fix version is here:
http://www-user.pas.rochester.edu/~gosia/mediawiki/index.php/Rachel,_a_GUI_for_Gosia#How_to_get_the_Rachel_package
See also the release notes here: http://www-user.pas.rochester.edu/~gosia/mediawiki/index.php/Gui_release_notes
Adam